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Phage and Prophage Genome Sequences

The phage genome sequences in this table were compiled by Rob Edwards with the help of Anca Segall and Ramy Aziz. Ramy and Rob have a paper in preparation that describes the data collection and analysis, but it has been in production for about 2 years.

The base unit for the data analysis was the paper by Sherwood Casjens (Prophages and bacterial genomics: what have we learned so far? Mol Microbiol. 2003 Jul;49(2):277-300. [PubMed]). The phages identified in this paper were extracted from the GenBank records, usually with extra flanking DNA, and the repeatfinder was used to identify flanking repeats.

The data were supplemented with complete phage genomes from NCBI phage genomes list, and other bacterial genomes where phages were known.

The data is copyright Rob Edwards, but may be distributed without restriction provided I retain copyright on the original records and am acknowledged for the relevant intellectual contributions.

You may download all the data as a tar-compressed archive.

You may search the data online.

File nameGenBank
Accession		Size
(bp)		TypeGenome
Tum1.gbkNC_00306267927linearAgrobacterium tumefaciens strain C58 circular chromosome, complete
Tum2.gbkNC_00306261199linearAgrobacterium tumefaciens strain C58 circular chromosome, complete
Bh1.gbkNC_002570170419linearBacillus halodurans
Bh2.gbkNC_00257050465linearBacillus halodurans
Bh3.gbkNC_00257043340linearBacillus halodurans
Bh4.gbkNC_00257074204linearBacillus halodurans
PBSX.gbkNC_00096466855linearBacillus subtilis
SKIN.gbkNC_00096486035linearBacillus subtilis
Spbeta.gbkNC_000964174321linearBacillus subtilis
Spgamma.gbkNC_00096462350linearBacillus subtilis
BL1.gbkNC_00430754176linearBifidobacterium longum NCC2705
cp32-1.gbkNC_00094830750circularBorrelia burgdorferi B31 plasmid cp32-1, complete sequence.
cp32-3.gbkNC_00094930223circularBorrelia burgdorferi B31 plasmid cp32-3, complete sequence.
cp32-4.gbkNC_00095030299circularBorrelia burgdorferi B31 plasmid cp32-4, complete sequence.
cp32-6.gbkNC_00095129838circularBorrelia burgdorferi B31 plasmid cp32-6, complete sequence.
cp32-7.gbkNC_00095230800circularBorrelia burgdorferi B31 plasmid cp32-7, complete sequence.
cp32-8.gbkNC_00095330885circularBorrelia burgdorferi B31 plasmid cp32-8, complete sequence.
cp32-9.gbkNC_00095430651circularBorrelia burgdorferi B31 plasmid cp32-9, complete sequence.
lp28-2.gbkAE00078629766linearBorrelia burgdorferi B31 plasmid lp28-2, complete plasmid sequence.
lp56.gbkNC_00095652971linearBorrelia burgdorferi B31 plasmid lp56, complete sequence.
cp-9.gbkNC_0019049386circularBorrelia burgdorferi plasmid cp9, complete sequence.
lp54.gbkNC_00185753561linearBorrelia burgdorferi plasmid lp54, complete sequence.
Bruc1.gbkNC_00331750264linearBrucella melitensis chromosome I, complete sequence.
Cc1.gbkNC_00269648340linearCaulobacter crescentus CB15
AR39.gbkNC_0021804532circularChlamydia phage phiCPAR39
Clo1.gbkNC_003030109147linearClostridium acetobutylicum ATCC824 complete genome.
Clo2.gbkNC_00303089937linearClostridium acetobutylicum ATCC824 complete genome.
Cpr1.gbkNC_00336669602linearClostridium perfringens
Cpt1.gbkNC_00455782950linearClostridium tetani E88
Cpt2.gbkNC_00455772482linearClostridium tetani E88
Cpt3.gbkNC_00455778933linearClostridium tetani E88
DR-1.gbkNC_00126333181linearDeinococcus radiodurans chromosome 1, complete sequence.
RadMu.gbkNC_00126474622linearDeinococcus radiodurans chromosome 2, complete sequence.
CP073-1.gbkNC_00443172942linearEscherichia coli CFT073
CP073-2.gbkNC_00443185768linearEscherichia coli CFT073
CP073-3.gbkNC_00443150738linearEscherichia coli CFT073
CP073-4.gbkNC_00443194862linearEscherichia coli CFT073
CP073-5.gbkNC_00443185353linearEscherichia coli CFT073
CP073-6.gbkNC_00443143213linearEscherichia coli CFT073
CP073-7.gbkNC_00443198938linearEscherichia coli CFT073
CP073-8.gbkNC_00443146496linearEscherichia coli CFT073
CP4-44.gbkNC_00091351830linearEscherichia coli K12
CP4-57.gbkNC_00091361624linearEscherichia coli K12
CP4-6.gbkNC_00091373769linearEscherichia coli K12
CPS-53.gbkNC_00091349634linearEscherichia coli K12
CPZ-55.gbkNC_00091346562linearEscherichia coli K12
DLP-12.gbkNC_00091360819linearEscherichia coli K12
QIN.gbkNC_00091359670linearEscherichia coli K12
Rac.gbkNC_00091362258linearEscherichia coli K12
e14.gbkNC_00091354313linearEscherichia coli K12
Sp1.gbkNC_00269550167linearEscherichia coli O157:H7
Sp10.gbkNC_00269588543linearEscherichia coli O157:H7
Sp11.gbkNC_00269585601linearEscherichia coli O157:H7
Sp12.gbkNC_00269582336linearEscherichia coli O157:H7
Sp13.gbkNC_00269560421linearEscherichia coli O157:H7
Sp14.gbkNC_00269585557linearEscherichia coli O157:H7
Sp15.gbkNC_00269587597linearEscherichia coli O157:H7
Sp16.gbkNC_00269546942linearEscherichia coli O157:H7
Sp17.gbkNC_00269564784linearEscherichia coli O157:H7
Sp18.gbkNC_00269579263linearEscherichia coli O157:H7
Sp2.gbkNC_00269553600linearEscherichia coli O157:H7
Sp3.gbkNC_00269577053linearEscherichia coli O157:H7
Sp4.gbkNC_00269589345linearEscherichia coli O157:H7
Sp5.gbkNC_002695102966linearEscherichia coli O157:H7
Sp6.gbkNC_00269588217linearEscherichia coli O157:H7
Sp7.gbkNC_00269555014linearEscherichia coli O157:H7
Sp8.gbkNC_00269587183linearEscherichia coli O157:H7
Sp9.gbkNC_00269587355linearEscherichia coli O157:H7
933W.gbkNC_002655101067linearEscherichia coli O157:H7 EDL933
CP-22.gbkNC_00265547341linearEscherichia coli O157:H7 EDL933
CP-933C.gbkNC_00265555032linearEscherichia coli O157:H7 EDL933
CP-933H.gbkNC_00265550179linearEscherichia coli O157:H7 EDL933
CP-933I.gbkNC_00265552357linearEscherichia coli O157:H7 EDL933
CP-933K.gbkNC_00265578099linearEscherichia coli O157:H7 EDL933
CP-933M.gbkNC_00265584938linearEscherichia coli O157:H7 EDL933
CP-933N.gbkNC_00265586764linearEscherichia coli O157:H7 EDL933
CP-933Oa.gbkNC_00265569782linearEscherichia coli O157:H7 EDL933
CP-933Ob.gbkNC_00265558288linearEscherichia coli O157:H7 EDL933
CP-933Oc.gbkNC_00265551287linearEscherichia coli O157:H7 EDL933
CP-933Od.gbkNC_00265561112linearEscherichia coli O157:H7 EDL933
CP-933P.gbkNC_00265584197linearEscherichia coli O157:H7 EDL933
CP-933R.gbkNC_00265586957linearEscherichia coli O157:H7 EDL933
CP-933T.gbkNC_00265560532linearEscherichia coli O157:H7 EDL933
CP-933V.gbkNC_00265588633linearEscherichia coli O157:H7 EDL933
CP-933X.gbkNC_00265593822linearEscherichia coli O157:H7 EDL933
CP-933Y.gbkNC_00265554131linearEscherichia coli O157:H7 EDL933
Flu.gbkNC_00090753998linearHaemophilus influenzae Rd
FluMu.gbkNC_00090774314linearHaemophilus influenzae Rd
MiniFluMu.gbkNC_00090741498linearHaemophilus influenzae Rd
bIL285.gbkNC_00266274917linearLactococcus lactis subsp. lactis
bIL286.gbkNC_00266282838linearLactococcus lactis subsp. lactis
bIL309.gbkNC_00266276009linearLactococcus lactis subsp. lactis
bIL310.gbkNC_00266254212linearLactococcus lactis subsp. lactis
bIL311.gbkNC_00266251951linearLactococcus lactis subsp. lactis
bIL312.gbkNC_00266251020linearLactococcus lactis subsp. lactis
List-I1.gbkNC_00321275746linearListeria innocua Clip11262
List-I2.gbkNC_00321250731linearListeria innocua Clip11262
List-I3.gbkNC_00321287673linearListeria innocua Clip11262
List-I4.gbkNC_00321288132linearListeria innocua Clip11262
List-I5.gbkNC_00321278510linearListeria innocua Clip11262
List-I6.gbkNC_00321274326linearListeria innocua Clip11262
List-M1.gbkNC_00321050727linearListeria monocytogenes strain EGD
List-M2.gbkNC_00321078347linearListeria monocytogenes strain EGD
Meso1.gbkNC_00267885819linearMesorhizobium loti
Meso2.gbkNC_00267875962linearMesorhizobium loti
Meso3.gbkNC_00267848244linearMesorhizobium loti
Mt1.gbkNC_00275548943linearMycobacterium tuberculosis CDC1551
Mt2.gbkNC_00275548563linearMycobacterium tuberculosis CDC1551
Rv1.gbkNC_00096247863linearMycobacterium tuberculosis H37Rv complete genome.
Rv2.gbkNC_00096251026linearMycobacterium tuberculosis H37Rv complete genome.
Pnm1.gbkNC_00311678970linearNeisseria meningitidis serogroup A strain Z2491 complete genome.
Pnm2.gbkNC_00311668845linearNeisseria meningitidis serogroup A strain Z2491 complete genome.
Pnm3.gbkNC_00311647104linearNeisseria meningitidis serogroup A strain Z2491 complete genome.
NeisMu1.gbkNC_00311274057linearNeisseria meningitidis serogroup B strain MC58 complete genome.
NeisMu2.gbkNC_00311243896linearNeisseria meningitidis serogroup B strain MC58 complete genome.
Past1.gbkNC_00266351555linearPasteurella multocida
PyocinF.gbkNC_00251653294linearPseudomonas aeruginosa PA01
PyocinR.gbkNC_00251656445linearPseudomonas aeruginosa PA01
PP01.gbkNC_00294794766linearPseudomonas putida KT2440
PP02.gbkNC_00294768669linearPseudomonas putida KT2440
PP03.gbkNC_00294779187linearPseudomonas putida KT2440
PP04.gbkNC_00294776724linearPseudomonas putida KT2440
RS1.gbkNC_00329599806linearRalstonia solanacearum
RS2.gbkNC_00329554830linearRalstonia solanacearum
RS3.gbkNC_00329547684linearRalstonia solanacearum
RS4.gbkNC_00329581959linearRalstonia solanacearum
RS5.gbkNC_00329546833linearRalstonia solanacearum
RS6.gbkNC_00329579745linearRalstonia solanacearum
RS7.gbkNC_00329551660linearRalstonia solanacearum
RS8.gbkNC_00329559030linearRalstonia solanacearum
Sti11.gbkNC_00338554152linearSalmonella enterica subsp. enterica serovar Typhi plasmid pHCM2,
Sti1.gbkNC_00319884009linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti10.gbkNC_00319850693linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti2.gbkNC_00319843649linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti3.gbkNC_00319874021linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti4b.gbkNC_00319884088linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti5.gbkNC_00319844333linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti6.gbkNC_00319843169linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti7.gbkNC_00319848297linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti7.gbk~NC_00319848297linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti8.gbkNC_00319873506linearSalmonella enterica subsp. enterica serovar Typhi, complete
Sti9.gbkNC_00319873298linearSalmonella enterica subsp. enterica serovar Typhi, complete
Fels-1.gbkNC_00319783906linearSalmonella typhimurium LT2
Fels-2.gbkNC_00319774807linearSalmonella typhimurium LT2
Gifsy-1.gbkNC_003197130374linearSalmonella typhimurium LT2
Gifsy-2.gbkNC_00319785487linearSalmonella typhimurium LT2
Stm6.gbkNC_00319754257linearSalmonella typhimurium LT2
Stm7.gbkNC_00319760418linearSalmonella typhimurium LT2
LambdaSo.gbkNC_00434790841linearShewanella oneidensis MR-1
MuSo1.gbkNC_00434774548linearShewanella oneidensis MR-1
MuSo2.gbkNC_00434774530linearShewanella oneidensis MR-1
Flex1.gbkNC_00433752530linearShigella flexneri 2a str. 301
Flex10.gbkNC_00433747981linearShigella flexneri 2a str. 301
Flex11.gbkNC_00433755401linearShigella flexneri 2a str. 301
Flex2.gbkNC_00433756789linearShigella flexneri 2a str. 301
Flex3.gbkNC_00433791076linearShigella flexneri 2a str. 301
Flex4.gbkNC_00433758963linearShigella flexneri 2a str. 301
Flex5.gbkNC_00433753090linearShigella flexneri 2a str. 301
Flex6.gbkNC_00433766605linearShigella flexneri 2a str. 301
Flex7.gbkNC_00433742255linearShigella flexneri 2a str. 301
Flex8.gbkNC_00433762844linearShigella flexneri 2a str. 301
Flex9.gbkNC_00433756704linearShigella flexneri 2a str. 301
Mu50A.gbkNC_00275885059linearStaphylococcus aureus strain Mu50
Mu50B.gbkNC_00275882597linearStaphylococcus aureus strain Mu50
Mu50C.gbkNC_00275845052linearStaphylococcus aureus strain Mu50
Sa2mw.gbkNC_00392383625linearStaphylococcus aureus subsp. aureus MW2
Sa3mw.gbkNC_00392382145linearStaphylococcus aureus subsp. aureus MW2
LambdaSa1.gbkNC_00411680954linearStreptococcus agalactiae 2603V/R
LambdaSa2.gbkNC_00411673800linearStreptococcus agalactiae 2603V/R
370.1.gbkNC_00273784319linearStreptococcus pyogenes
370.2.gbkNC_00273769696linearStreptococcus pyogenes
370.3.gbkNC_00273781958linearStreptococcus pyogenes
370.4.gbkNC_00273749365linearStreptococcus pyogenes
315.1.gbkNC_00407078964linearStreptococcus pyogenes MGAS315
315.2.gbkNC_00407080456linearStreptococcus pyogenes MGAS315
315.3.gbkNC_00407074125linearStreptococcus pyogenes MGAS315
315.4.gbkNC_00407081512linearStreptococcus pyogenes MGAS315
315.5.gbkNC_00407077969linearStreptococcus pyogenes MGAS315
315.6.gbkNC_00407079734linearStreptococcus pyogenes MGAS315
370.3-like.gbkNC_00348575057linearStreptococcus pyogenes strain MGAS8232
sda.gbkNC_00348581763linearStreptococcus pyogenes strain MGAS8232
speA.gbkNC_00348578833linearStreptococcus pyogenes strain MGAS8232
speC.gbkNC_00348580673linearStreptococcus pyogenes strain MGAS8232
speL_M.gbkNC_00348586460linearStreptococcus pyogenes strain MGAS8232
Stc1.gbkNC_00388852944linearStreptomyces coelicolor A3(2)
CTX.gbkNC_00250549130linearVibrio cholerae chromosome I, complete chromosome.
VibMu.gbkNC_00250545206linearVibrio cholerae chromosome I, complete chromosome.
XacP1.gbkNC_00391950606linearXanthomonas axonopodis pv. citri str. 306
XacP2.gbkNC_00391957254linearXanthomonas axonopodis pv. citri str. 306
Lf1.gbkNC_00390246082linearXanthomonas campestris pv. campestris str. ATCC 33913, complete
Lf2.gbkNC_00390246071linearXanthomonas campestris pv. campestris str. ATCC 33913, complete
XccP1.gbkNC_00390276965linearXanthomonas campestris pv. campestris str. ATCC 33913, complete
XfP1.gbkNC_00248881261linearXylella fastidiosa 9a5c
XfP10.gbkNC_00248843192linearXylella fastidiosa 9a5c
XfP2.gbkNC_00248882457linearXylella fastidiosa 9a5c
XfP3.gbkNC_00248866444linearXylella fastidiosa 9a5c
XfP4.gbkNC_00248885077linearXylella fastidiosa 9a5c
XfP5.gbkNC_00248880520linearXylella fastidiosa 9a5c
XfP6.gbkNC_00248854149linearXylella fastidiosa 9a5c
XfP7.gbkNC_00248846065linearXylella fastidiosa 9a5c
XfP8.gbkNC_00248841134linearXylella fastidiosa 9a5c
XfP9.gbkNC_00248850527linearXylella fastidiosa 9a5c
Xpd1.gbkNC_00455653595linearXylella fastidiosa Temecula1
Xpd2.gbkNC_00455644993linearXylella fastidiosa Temecula1
Xpd3.gbkNC_00455664676linearXylella fastidiosa Temecula1
Xpd4.gbkNC_00455696765linearXylella fastidiosa Temecula1
Xpd5.gbkNC_004556144217linearXylella fastidiosa Temecula1
Xpd6.gbkNC_00455645908linearXylella fastidiosa Temecula1
Xpd7.gbkNC_00455647831linearXylella fastidiosa Temecula1
Xpd8.gbkNC_00455656886linearXylella fastidiosa Temecula1
YP8.gbkNC_00313439777linearYersinia pestis CO92 plasmid pMT1, complete sequence.
Yers1.gbkNC_00408879339linearYersinia pestis KIM
Yers2.gbkNC_00408846962linearYersinia pestis KIM
Yers3.gbkNC_00408857729linearYersinia pestis KIM
Yers4.gbkNC_00408850345linearYersinia pestis KIM
Yers5.gbkNC_00408846116linearYersinia pestis KIM
YP1.gbkNC_00314347299linearYersinia pestis strain CO92
YP2.gbkNC_00314350278linearYersinia pestis strain CO92
YP3.gbkNC_00314364036linearYersinia pestis strain CO92
YP4.gbkNC_00314346978linearYersinia pestis strain CO92
YP5.gbkNC_00314390556linearYersinia pestis strain CO92
YP6.gbkNC_00314348831linearYersinia pestis strain CO92
YP7.gbkNC_00314346430linearYersinia pestis strain CO92